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  5. AMTR_s00086p00164400

AMTR_s00086p00164400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00086.103

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component


Gene families : OG0001283 (Archaeplastida) Phylogenetic Tree(s): OG0001283_tree ,
OG_05_0001263 (LandPlants) Phylogenetic Tree(s): OG_05_0001263_tree ,
OG_06_0001139 (SeedPlants) Phylogenetic Tree(s): OG_06_0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00086p00164400
Cluster HCCA: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
AT2G01250 No alias Ribosomal protein L30/L7 family protein 0.14 Archaeplastida
Cpa|evm.model.tig00020909.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Cre12.g537800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
GSVIVT01029288001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01029655001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01034230001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Gb_20650 No alias component RPL7 of LSU proteome component 0.11 Archaeplastida
LOC_Os04g51630.1 No alias component RPL7 of LSU proteome component 0.09 Archaeplastida
LOC_Os08g13690.1 No alias component RPL7 of LSU proteome component 0.09 Archaeplastida
LOC_Os08g42920.1 No alias component RPL7 of LSU proteome component 0.02 Archaeplastida
MA_10428203g0010 No alias component RPL7 of LSU proteome component 0.05 Archaeplastida
MA_109845g0010 No alias component RPL7 of LSU proteome component 0.13 Archaeplastida
MA_47548g0010 No alias component RPL7 of LSU proteome component 0.08 Archaeplastida
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.12 Archaeplastida
Pp3c11_13640V3.1 No alias Ribosomal protein L30/L7 family protein 0.02 Archaeplastida
Pp3c1_37460V3.1 No alias Ribosomal protein L30/L7 family protein 0.07 Archaeplastida
Pp3c1_39470V3.1 No alias Ribosomal protein L30/L7 family protein 0.09 Archaeplastida
Pp3c2_1610V3.1 No alias Ribosomal protein L30/L7 family protein 0.05 Archaeplastida
Pp3c2_5820V3.1 No alias Ribosomal protein L30/L7 family protein 0.08 Archaeplastida
Solyc06g068400.3.1 No alias component RPL7 of LSU proteome component 0.03 Archaeplastida
Solyc07g008370.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e003731_P002 No alias component RPL7 of LSU proteome component 0.04 Archaeplastida
Zm00001e007015_P002 No alias component RPL7 of LSU proteome component 0.11 Archaeplastida
Zm00001e022294_P001 No alias component RPL7 of LSU proteome component 0.13 Archaeplastida
Zm00001e040072_P002 No alias component RPL7 of LSU proteome component 0.09 Archaeplastida
Zm00001e041593_P001 No alias component RPL7 of LSU proteome component 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 15 75
IPR016082 Ribosomal_L30_ferredoxin-like 88 139
No external refs found!