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  5. AMTR_s00088p00114920

AMTR_s00088p00114920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.80

Description : Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana


Gene families : OG0000288 (Archaeplastida) Phylogenetic Tree(s): OG0000288_tree ,
OG_05_0010558 (LandPlants) Phylogenetic Tree(s): OG_05_0010558_tree ,
OG_06_0010215 (SeedPlants) Phylogenetic Tree(s): OG_06_0010215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00114920
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT5G51640 YLS7, TBL17 Plant protein of unknown function (DUF828) 0.02 Archaeplastida
Gb_25866 No alias mannan O-acetyltransferase (MOAT) 0.02 Archaeplastida
LOC_Os01g46410.1 No alias Protein trichome birefringence-like 21 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os06g12840.1 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os07g15230.1 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os07g15320.1 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g20850.1 No alias xyloglucan O-acetyltransferase (AXY4) 0.03 Archaeplastida
Pp3c5_27060V3.1 No alias TRICHOME BIREFRINGENCE-LIKE 25 0.02 Archaeplastida
Solyc02g065600.3.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.03 Archaeplastida
Solyc03g046270.4.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e020296_P001 No alias Protein trichome birefringence-like 20 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030880_P002 No alias Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030881_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e030883_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e036072_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e036803_P001 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Neighborhood
MF GO:0004970 ionotropic glutamate receptor activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005231 excitatory extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008066 glutamate receptor activity IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022824 transmitter-gated ion channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022835 transmitter-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
CC GO:0030288 outer membrane-bounded periplasmic space IEP Neighborhood
MF GO:0030594 neurotransmitter receptor activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
CC GO:0042597 periplasmic space IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR026057 PC-Esterase 122 408
IPR025846 PMR5_N_dom 68 121
No external refs found!