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  5. AMTR_s00088p00159600

AMTR_s00088p00159600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.130

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor


Gene families : OG0008769 (Archaeplastida) Phylogenetic Tree(s): OG0008769_tree ,
OG_05_0009193 (LandPlants) Phylogenetic Tree(s): OG_05_0009193_tree ,
OG_06_0011513 (SeedPlants) Phylogenetic Tree(s): OG_06_0011513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00159600
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037780001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
Pp3c11_22990V3.1 No alias Mitochondrial transcription termination factor family protein 0.03 Archaeplastida
Pp3c7_3780V3.1 No alias Mitochondrial transcription termination factor family protein 0.02 Archaeplastida
Zm00001e010645_P002 No alias transcription factor (mTERF) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 192 385
IPR003690 MTERF 277 480
No external refs found!