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  5. AMTR_s00088p00161000

AMTR_s00088p00161000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.132

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0001538 (Archaeplastida) Phylogenetic Tree(s): OG0001538_tree ,
OG_05_0000997 (LandPlants) Phylogenetic Tree(s): OG_05_0000997_tree ,
OG_06_0001832 (SeedPlants) Phylogenetic Tree(s): OG_06_0001832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00161000
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G21450 SCL1 SCARECROW-like 1 0.03 Archaeplastida
AT1G50600 SCL5 scarecrow-like 5 0.05 Archaeplastida
AT4G17230 SCL13 SCARECROW-like 13 0.09 Archaeplastida
GSVIVT01010007001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.08 Archaeplastida
GSVIVT01037777001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.08 Archaeplastida
Gb_40278 No alias transcription factor (GRAS) 0.03 Archaeplastida
LOC_Os01g65900.1 No alias transcription factor (GRAS) 0.02 Archaeplastida
LOC_Os07g36170.2 No alias transcription factor (GRAS) 0.04 Archaeplastida
LOC_Os07g39470.1 No alias transcription factor (GRAS) 0.08 Archaeplastida
MA_10432093g0010 No alias transcription factor (GRAS) 0.03 Archaeplastida
Pp3c1_2540V3.1 No alias scarecrow-like 5 0.03 Archaeplastida
Pp3c2_30770V3.1 No alias scarecrow-like 5 0.03 Archaeplastida
Solyc04g064550.1.1 No alias transcription factor (GRAS) 0.09 Archaeplastida
Solyc05g054170.4.1 No alias transcription factor (GRAS) 0.03 Archaeplastida
Solyc06g035620.3.1 No alias transcription factor (GRAS) 0.06 Archaeplastida
Solyc07g047950.1.1 No alias transcription factor (GRAS) 0.02 Archaeplastida
Solyc07g065270.1.1 No alias transcription factor (GRAS) 0.03 Archaeplastida
Solyc12g005340.3.1 No alias transcription factor (GRAS) 0.1 Archaeplastida
Zm00001e002780_P001 No alias transcription factor (GRAS) 0.04 Archaeplastida
Zm00001e010646_P001 No alias transcription factor (GRAS) 0.03 Archaeplastida
Zm00001e031707_P001 No alias transcription factor (GRAS) 0.02 Archaeplastida
Zm00001e035384_P001 No alias transcription factor (GRAS) 0.05 Archaeplastida
Zm00001e038811_P001 No alias transcription factor (GRAS) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 189 558
No external refs found!