AMTR_s00089p00040540 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00089.11

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13a component

Gene families : OG0002232 (Archaeplastida) Phylogenetic Tree(s): OG0002232_tree ,
OG_05_0002287 (LandPlants) Phylogenetic Tree(s): OG_05_0002287_tree ,
OG_06_0002922 (SeedPlants) Phylogenetic Tree(s): OG_06_0002922_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00089p00040540
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AT3G07110	No alias	Ribosomal protein L13 family protein	0.24	Archaeplastida
AT3G24830	No alias	Ribosomal protein L13 family protein	0.31	Archaeplastida
AT4G13170	No alias	Ribosomal protein L13 family protein	0.1	Archaeplastida
AT5G48760	No alias	Ribosomal protein L13 family protein	0.31	Archaeplastida
Cpa\|evm.model.tig00000792.29	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	Archaeplastida
Cre12.g532550	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
GSVIVT01021080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
GSVIVT01028661001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	Archaeplastida
LOC_Os03g54890.1	No alias	component RPL13a of LSU proteome component	0.26	Archaeplastida
LOC_Os07g01870.1	No alias	component RPL13a of LSU proteome component	0.04	Archaeplastida
MA_186340g0010	No alias	component RPL13a of LSU proteome component	0.28	Archaeplastida
Mp2g08690.1	No alias	component RPL13a of LSU proteome component	0.32	Archaeplastida
Mp4g15790.1	No alias	component RPL13a of LSU proteome component	0.32	Archaeplastida
Pp3c11_17280V3.1	No alias	Ribosomal protein L13 family protein	0.17	Archaeplastida
Pp3c19_10330V3.1	No alias	Ribosomal protein L13 family protein	0.23	Archaeplastida
Pp3c1_15830V3.1	No alias	Ribosomal protein L13 family protein	0.17	Archaeplastida
Pp3c2_20550V3.1	No alias	Ribosomal protein L13 family protein	0.23	Archaeplastida
Pp3c7_12270V3.1	No alias	Ribosomal protein L13 family protein	0.13	Archaeplastida
Smo166650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
Solyc05g053670.3.1	No alias	component RPL13a of LSU proteome component	0.24	Archaeplastida
Solyc09g091740.4.1	No alias	component RPL13a of LSU proteome component	0.27	Archaeplastida
Solyc12g098330.3.1	No alias	no hits & (original description: none)	0.23	Archaeplastida
Zm00001e005719_P002	No alias	component RPL13a of LSU proteome component	0.25	Archaeplastida
Zm00001e012017_P002	No alias	component RPL13a of LSU proteome component	0.21	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
CC	GO:0016272	prefoldin complex	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	12	125

External Links

No external refs found!

AMTR_s00089p00040540 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation