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  5. AMTR_s00089p00181680

AMTR_s00089p00181680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00089.110

Description : Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase


Gene families : OG0004465 (Archaeplastida) Phylogenetic Tree(s): OG0004465_tree ,
OG_05_0005014 (LandPlants) Phylogenetic Tree(s): OG_05_0005014_tree ,
OG_06_0006483 (SeedPlants) Phylogenetic Tree(s): OG_06_0006483_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00089p00181680
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT5G16440 IPP1 isopentenyl diphosphate isomerase 1 0.02 Archaeplastida
Cpa|evm.model.tig00001107.3 No alias Secondary metabolism.terpenoids.mevalonate... 0.01 Archaeplastida
Solyc04g056390.3.1 No alias isopentenyl diphosphate isomerase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
InterPro domains Description Start Stop
IPR000086 NUDIX_hydrolase_dom 111 259
No external refs found!