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  5. AMTR_s00090p00047840

AMTR_s00090p00047840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00090.11

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00090p00047840
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G65570 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G43860 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 Archaeplastida
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
GSVIVT01033360001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g07790.1 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9231294g0010 No alias No annotation 0.03 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g080210.2.1 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
Zm00001e026160_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e026600_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 49 372
No external refs found!