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  5. AMTR_s00091p00025820

AMTR_s00091p00025820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00091.4

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000296 (SeedPlants) Phylogenetic Tree(s): OG_06_0000296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00091p00025820
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00137930 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AT1G17950 BW52, ATMYB52, MYB52 myb domain protein 52 0.02 Archaeplastida
AT1G79180 ATMYB63, MYB63 myb domain protein 63 0.02 Archaeplastida
AT3G50060 MYB77 myb domain protein 77 0.03 Archaeplastida
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.02 Archaeplastida
GSVIVT01016768001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01027811001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01028171001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_02020 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_09986 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_22885 No alias transcription factor (MYB) 0.03 Archaeplastida
Gb_39081 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os02g46780.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os05g04820.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os08g33800.1 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10433651g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_246142g0010 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_62488g0010 No alias transcription factor (MYB) 0.05 Archaeplastida
MA_7105735g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9818613g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
Mp5g13040.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c20_8950V3.1 No alias myb domain protein r1 0.03 Archaeplastida
Pp3c23_7530V3.1 No alias myb domain protein 77 0.02 Archaeplastida
Pp3c7_23450V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Smo90153 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Solyc04g005710.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc05g055030.2.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc12g005640.2.1 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e010995_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e017470_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e018193_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e019321_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e040265_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e040334_P001 No alias transcription factor (MYB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 70 111
IPR001005 SANT/Myb 14 61
No external refs found!