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  5. AMTR_s00092p00105940

AMTR_s00092p00105940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.60

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0009116 (Archaeplastida) Phylogenetic Tree(s): OG0009116_tree ,
OG_05_0008968 (LandPlants) Phylogenetic Tree(s): OG_05_0008968_tree ,
OG_06_0005695 (SeedPlants) Phylogenetic Tree(s): OG_06_0005695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00105940
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT1G30290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 652 701
IPR002885 Pentatricopeptide_repeat 301 350
IPR002885 Pentatricopeptide_repeat 477 526
IPR002885 Pentatricopeptide_repeat 443 470
IPR002885 Pentatricopeptide_repeat 613 645
IPR002885 Pentatricopeptide_repeat 273 299
IPR002885 Pentatricopeptide_repeat 725 747
IPR002885 Pentatricopeptide_repeat 550 580
No external refs found!