1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00092p00114580

AMTR_s00092p00114580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.74

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.FBX component


Gene families : OG0001044 (Archaeplastida) Phylogenetic Tree(s): OG0001044_tree ,
OG_05_0000936 (LandPlants) Phylogenetic Tree(s): OG_05_0000936_tree ,
OG_06_0000895 (SeedPlants) Phylogenetic Tree(s): OG_06_0000895_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00114580
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021526001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Mp4g07250.1 No alias component FBX of SCF E3 ubiquitin ligase complex 0.01 Archaeplastida
Solyc04g072930.1.1 No alias component FBX of SCF E3 ubiquitin ligase complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!