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  5. AMTR_s00092p00120100

AMTR_s00092p00120100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.83

Description : RNA biosynthesis.siRNA biogenesis.HEN1 siRNA methyltransferase


Gene families : OG0004364 (Archaeplastida) Phylogenetic Tree(s): OG0004364_tree ,
OG_05_0004548 (LandPlants) Phylogenetic Tree(s): OG_05_0004548_tree ,
OG_06_0004474 (SeedPlants) Phylogenetic Tree(s): OG_06_0004474_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00120100
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT4G20910 HEN1, CRM2 double-stranded RNA binding protein-related / DsRBD... 0.03 Archaeplastida
MA_468458g0010 No alias miRNA/siRNA methyltransferase (HEN1). protein folding... 0.03 Archaeplastida
Pp3c1_60V3.1 No alias double-stranded RNA binding protein-related / DsRBD... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!