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  5. AMTR_s00092p00162140

AMTR_s00092p00162140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.138

Description : Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR


Gene families : OG0004731 (Archaeplastida) Phylogenetic Tree(s): OG0004731_tree ,
OG_05_0004390 (LandPlants) Phylogenetic Tree(s): OG_05_0004390_tree ,
OG_06_0005466 (SeedPlants) Phylogenetic Tree(s): OG_06_0005466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00162140
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Cre06.g261000 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 Archaeplastida
GSVIVT01020484001 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 Archaeplastida
Gb_04149 No alias component PsbR of PS-II complex 0.06 Archaeplastida
LOC_Os07g05360.1 No alias component PsbR of PS-II complex 0.02 Archaeplastida
LOC_Os08g10020.1 No alias component PsbR of PS-II complex 0.08 Archaeplastida
MA_282g0010 No alias component PsbR of PS-II complex 0.05 Archaeplastida
Mp3g05840.1 No alias component PsbR of PS-II complex 0.08 Archaeplastida
Pp3c16_5650V3.1 No alias photosystem II subunit R 0.04 Archaeplastida
Pp3c27_2340V3.1 No alias photosystem II subunit R 0.02 Archaeplastida
Pp3c5_4230V3.1 No alias photosystem II subunit R 0.03 Archaeplastida
Solyc07g066310.3.1 No alias component PsbR of PS-II complex 0.03 Archaeplastida
Zm00001e021601_P001 No alias component PsbR of PS-II complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0042651 thylakoid membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
MF GO:0009496 plastoquinol--plastocyanin reductase activity IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
MF GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006814 PSII_PsbR 45 141
No external refs found!