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  5. AMTR_s00093p00164790

AMTR_s00093p00164790 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00093.55

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000935 (Archaeplastida) Phylogenetic Tree(s): OG0000935_tree ,
OG_05_0000679 (LandPlants) Phylogenetic Tree(s): OG_05_0000679_tree ,
OG_06_0000528 (SeedPlants) Phylogenetic Tree(s): OG_06_0000528_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00093p00164790
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G13290 WIP6, DOT5 C2H2-like zinc finger protein 0.05 Archaeplastida
GSVIVT01009046001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01032076001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
GSVIVT01033329001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
LOC_Os06g40960.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
LOC_Os08g39390.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc03g059270.4.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc05g009770.3.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e003504_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e009663_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e024373_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e033781_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!