AMTR_s00095p00146440 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00095.113

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS27a component

Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00095p00146440
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.05	Archaeplastida
AT2G47110	UBQ6	ubiquitin 6	0.06	Archaeplastida
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.06	Archaeplastida
AT3G62250	UBQ5	ubiquitin 5	0.06	Archaeplastida
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	Archaeplastida
Cre06.g273600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	Archaeplastida
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Gb_15027	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Gb_40288	No alias	component RPS27a of SSU proteome	0.02	Archaeplastida
Gb_41257	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
LOC_Os03g13170.1	No alias	component RPL40 of LSU proteome component	0.04	Archaeplastida
LOC_Os05g06770.1	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
LOC_Os09g39500.1	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
MA_529552g0010	No alias	component RPS27a of SSU proteome	0.06	Archaeplastida
MA_9129425g0010	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
Mp7g12490.1	No alias	component RPL40 of LSU proteome component	0.03	Archaeplastida
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Pp3c10_25270V3.1	No alias	ubiquitin extension protein 1	0.05	Archaeplastida
Pp3c12_5640V3.1	No alias	ubiquitin 6	0.04	Archaeplastida
Pp3c12_5760V3.1	No alias	ubiquitin 6	0.05	Archaeplastida
Pp3c16_3920V3.1	No alias	related to ubiquitin 1	0.02	Archaeplastida
Pp3c20_23170V3.1	No alias	ubiquitin extension protein 1	0.05	Archaeplastida
Pp3c24_430V3.1	No alias	ubiquitin extension protein 1	0.03	Archaeplastida
Pp3c3_25480V3.1	No alias	ubiquitin extension protein 1	0.07	Archaeplastida
Pp3c4_11930V3.1	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Archaeplastida
Pp3c4_19000V3.1	No alias	ubiquitin 6	0.05	Archaeplastida
Pp3c8_14230V3.1	No alias	ubiquitin 6	0.04	Archaeplastida
Smo111605	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Smo93613	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc03g082570.4.1	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Solyc08g083120.3.1	No alias	component RPL40 of LSU proteome component	0.04	Archaeplastida
Solyc12g099025.1.1	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Zm00001e003606_P001	No alias	component RPS27a of SSU proteome	0.05	Archaeplastida
Zm00001e009474_P001	No alias	component RPL40 of LSU proteome component	0.05	Archaeplastida
Zm00001e026237_P001	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida
Zm00001e028916_P001	No alias	component RPS27a of SSU proteome	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005885	Arp2/3 protein complex	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0007015	actin filament organization	IEP	Neighborhood
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0008154	actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0010638	positive regulation of organelle organization	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
BP	GO:0030041	actin filament polymerization	IEP	Neighborhood
BP	GO:0030832	regulation of actin filament length	IEP	Neighborhood
BP	GO:0030833	regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0032271	regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032273	positive regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0032970	regulation of actin filament-based process	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0043254	regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0045010	actin nucleation	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
BP	GO:0110053	regulation of actin filament organization	IEP	Neighborhood
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002906	Ribosomal_S27a	102	147
IPR000626	Ubiquitin_dom	6	74

External Links

No external refs found!

AMTR_s00095p00146440 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation