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  5. AMTR_s00101p00159320

AMTR_s00101p00159320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00101.135

No description available


Gene families : OG0001777 (Archaeplastida) Phylogenetic Tree(s): OG0001777_tree ,
OG_05_0001310 (LandPlants) Phylogenetic Tree(s): OG_05_0001310_tree ,
OG_06_0016850 (SeedPlants) Phylogenetic Tree(s): OG_06_0016850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00101p00159320
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT3G12320 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.12 Archaeplastida
AT3G54500 No alias BEST Arabidopsis thaliana protein match is: dentin... 0.12 Archaeplastida
AT5G06980 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.1 Archaeplastida
AT5G64170 No alias dentin sialophosphoprotein-related 0.05 Archaeplastida
GSVIVT01003080001 No alias Protein LNK1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01003081001 No alias Multi-process regulation.circadian clock.evening element... 0.07 Archaeplastida
GSVIVT01036604001 No alias No description available 0.04 Archaeplastida
Gb_13230 No alias LNK circadian clock transcriptional co-activator 0.04 Archaeplastida
Gb_36250 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g17396.2 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os03g27019.1 No alias LNK circadian clock transcriptional co-activator 0.04 Archaeplastida
MA_10428838g0010 No alias LNK circadian clock transcriptional co-activator 0.03 Archaeplastida
Mp4g19240.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c13_6620V3.1 No alias No annotation 0.07 Archaeplastida
Pp3c3_2690V3.1 No alias No annotation 0.04 Archaeplastida
Smo417164 No alias No description available 0.06 Archaeplastida
Smo440439 No alias Multi-process regulation.circadian clock.evening element... 0.06 Archaeplastida
Solyc01g096630.3.1 No alias no hits & (original description: none) 0.11 Archaeplastida
Solyc01g105120.4.1 No alias LNK circadian clock transcriptional co-activator 0.1 Archaeplastida
Solyc04g009050.4.1 No alias LNK circadian clock transcriptional co-activator 0.12 Archaeplastida
Zm00001e001871_P006 No alias LNK circadian clock transcriptional co-activator 0.07 Archaeplastida
Zm00001e025468_P002 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e037970_P002 No alias LNK circadian clock transcriptional co-activator 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!