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  5. AMTR_s00102p00046460

AMTR_s00102p00046460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00102.17

Description : Nutrient uptake.iron uptake.reduction-based strategy uptake.transcription factor FIT


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0001361 (SeedPlants) Phylogenetic Tree(s): OG_06_0001361_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00046460
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00111140 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.01 Archaeplastida
AMTR_s00100p00127110 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT2G16910 AMS basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 Archaeplastida
AT2G28160 ATBHLH029,... FER-like regulator of iron uptake 0.01 Archaeplastida
AT3G26744 ATICE1, ICE1, SCRM basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 Archaeplastida
AT5G65640 bHLH093 beta HLH protein 93 0.01 Archaeplastida
Gb_18877 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
MA_28638g0010 No alias transcription factor (bHLH) 0.01 Archaeplastida
MA_336364g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_63506g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 Archaeplastida
Mp2g02460.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Pp3c3_15850V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 Archaeplastida
Solyc05g014590.3.1 No alias transcription factor (bHLH) 0.01 Archaeplastida
Solyc08g062780.2.1 No alias transcription factor (bHLH) 0.01 Archaeplastida
Zm00001e040732_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011598 bHLH_dom 93 135
No external refs found!