AMTR_s00103p00101630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00103.54

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP2 DNA topoisomerase


Gene families : OG0003355 (Archaeplastida) Phylogenetic Tree(s): OG0003355_tree ,
OG_05_0004398 (LandPlants) Phylogenetic Tree(s): OG_05_0004398_tree ,
OG_06_0006142 (SeedPlants) Phylogenetic Tree(s): OG_06_0006142_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00103p00101630
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT3G23890 TOPII, ATTOPII topoisomerase II 0.11 Archaeplastida
Cpa|evm.model.tig00021432.55 No alias DNA topoisomerase 2 OS=Pisum sativum 0.02 Archaeplastida
Cpa|evm.model.tig00021433.2 No alias DNA topoisomerase 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre01.g009250 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.02 Archaeplastida
GSVIVT01032138001 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.16 Archaeplastida
Gb_11673 No alias DNA topoisomerase (TOP2) 0.1 Archaeplastida
Gb_12824 No alias DNA topoisomerase 2 OS=Pisum sativum (sp|o24308|top2_pea : 112.0) 0.11 Archaeplastida
LOC_Os02g47150.1 No alias DNA topoisomerase (TOP2) 0.08 Archaeplastida
MA_133272g0010 No alias DNA topoisomerase (TOP2) 0.1 Archaeplastida
MA_6634g0010 No alias DNA topoisomerase (TOP2) 0.08 Archaeplastida
Mp3g13420.1 No alias DNA topoisomerase (TOP2) 0.09 Archaeplastida
Pp3c18_20260V3.1 No alias topoisomerase II 0.1 Archaeplastida
Pp3c19_3610V3.1 No alias topoisomerase II 0.06 Archaeplastida
Smo127267 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.11 Archaeplastida
Smo98330 No alias Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.12 Archaeplastida
Solyc01g087500.3.1 No alias DNA topoisomerase (TOP2) 0.14 Archaeplastida
Zm00001e015542_P001 No alias DNA topoisomerase (TOP2) 0.09 Archaeplastida
Zm00001e023296_P001 No alias DNA topoisomerase (TOP2) 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0000247 C-8 sterol isomerase activity IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000910 cytokinesis IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006696 ergosterol biosynthetic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008204 ergosterol metabolic process IEP Neighborhood
BP GO:0009186 deoxyribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044107 cellular alcohol metabolic process IEP Neighborhood
BP GO:0044108 cellular alcohol biosynthetic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0097384 cellular lipid biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1902652 secondary alcohol metabolic process IEP Neighborhood
BP GO:1902653 secondary alcohol biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002205 Topo_IIA_A/C 705 1165
IPR006171 TOPRIM_domain 461 566
IPR003594 HATPase_C 83 227
IPR013506 Topo_IIA_bsu_dom2 273 430
No external refs found!