AMTR_s00103p00124340 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00103.76

Description : Cell wall.cellulose.synthesis.cellulose synthase complex (CSC).CSC components.CesA-type catalytic component

Gene families : OG0000303 (Archaeplastida) Phylogenetic Tree(s): OG0000303_tree ,
OG_05_0000193 (LandPlants) Phylogenetic Tree(s): OG_05_0000193_tree ,
OG_06_0000126 (SeedPlants) Phylogenetic Tree(s): OG_06_0000126_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00103p00124340
Cluster	HCCA: Cluster_240

Target	Alias	Description	ECC score	Gene Family Method
AT4G18780	CESA8, LEW2,...	cellulose synthase family protein	0.03	Archaeplastida
AT4G32410	AtCESA1, RSW1, CESA1	cellulose synthase 1	0.05	Archaeplastida
AT5G05170	IXR1, CEV1,...	Cellulose synthase family protein	0.05	Archaeplastida
AT5G17420	MUR10, ATCESA7,...	Cellulose synthase family protein	0.03	Archaeplastida
AT5G44030	CESA4, NWS2, IRX5	cellulose synthase A4	0.03	Archaeplastida
AT5G64740	CESA6, PRC1, IXR2, E112	cellulose synthase 6	0.04	Archaeplastida
GSVIVT01013471001	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.04	Archaeplastida
GSVIVT01021248001	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	Archaeplastida
GSVIVT01023643001	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	Archaeplastida
GSVIVT01028402001	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	Archaeplastida
Gb_04147	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Gb_05828	No alias	catalytic component CesA of cellulose synthase complex	0.02	Archaeplastida
Gb_07428	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Gb_07444	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Gb_17419	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Gb_31853	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Gb_32651	No alias	catalytic component CesA of cellulose synthase complex	0.06	Archaeplastida
LOC_Os01g54620.1	No alias	catalytic component CesA of cellulose synthase complex	0.02	Archaeplastida
LOC_Os03g59340.1	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida
LOC_Os03g62090.1	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida
LOC_Os05g08370.1	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida
LOC_Os07g10770.1	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida
LOC_Os07g24190.1	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
MA_102060g0010	No alias	catalytic component CesA of cellulose synthase complex	0.02	Archaeplastida
MA_10429177g0010	No alias	catalytic component CesA of cellulose synthase complex	0.05	Archaeplastida
MA_140410g0010	No alias	catalytic component CesA of cellulose synthase complex	0.06	Archaeplastida
MA_4943g0010	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Mp7g07800.1	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Pp3c15_7150V3.1	No alias	cellulose synthase 1	0.04	Archaeplastida
Pp3c1_22600V3.1	No alias	Cellulose synthase family protein	0.02	Archaeplastida
Pp3c2_13330V3.1	No alias	Cellulose synthase family protein	0.04	Archaeplastida
Pp3c3_34520V3.1	No alias	Cellulose synthase family protein	0.03	Archaeplastida
Pp3c8_7420V3.1	No alias	Cellulose synthase family protein	0.03	Archaeplastida
Pp3c9_2550V3.1	No alias	cellulose synthase 1	0.04	Archaeplastida
Smo141535	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.03	Archaeplastida
Smo163575	No alias	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.07	Archaeplastida
Solyc01g087210.3.1	No alias	catalytic component CesA of cellulose synthase complex	0.08	Archaeplastida
Solyc04g071650.4.1	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Solyc08g061100.3.1	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida
Solyc12g056580.2.1	No alias	catalytic component CesA of cellulose synthase complex	0.02	Archaeplastida
Zm00001e004630_P001	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Zm00001e006290_P001	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Zm00001e009406_P001	No alias	catalytic component CesA of cellulose synthase complex	0.05	Archaeplastida
Zm00001e009570_P001	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Zm00001e009592_P002	No alias	catalytic component CesA of cellulose synthase complex	0.04	Archaeplastida
Zm00001e009843_P002	No alias	catalytic component CesA of cellulose synthase complex	0.03	Archaeplastida
Zm00001e026711_P001	No alias	catalytic component CesA of cellulose synthase complex	0.06	Archaeplastida
Zm00001e031187_P001	No alias	catalytic component CesA of cellulose synthase complex	0.05	Archaeplastida
Zm00001e033093_P003	No alias	catalytic component CesA of cellulose synthase complex	0.06	Archaeplastida
Zm00001e033234_P001	No alias	No annotation	0.03	Archaeplastida
Zm00001e033375_P001	No alias	catalytic component CesA of cellulose synthase complex	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEA	Interproscan
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004806	triglyceride lipase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006184	obsolete GTP catabolic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005150	Cellulose_synth	360	1082

External Links

No external refs found!

AMTR_s00103p00124340 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation