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  5. AMTR_s00105p00078750

AMTR_s00105p00078750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00105.43

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00105p00078750
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00033580 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.03 Archaeplastida
AT1G53840 PME1, ATPME1 pectin methylesterase 1 0.04 Archaeplastida
AT2G26440 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.01 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G00190 PME38, ATPME38 pectin methylesterase 38 0.03 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.02 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.03 Archaeplastida
Gb_15174 No alias pectin methylesterase 0.03 Archaeplastida
Gb_24214 No alias pectin methylesterase 0.02 Archaeplastida
Gb_24564 No alias pectin methylesterase 0.01 Archaeplastida
Gb_28162 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g57854.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10377619g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10434786g0010 No alias No annotation 0.03 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.02 Archaeplastida
MA_86577g0010 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_25030V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.03 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Solyc01g091050.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g098940.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc02g014300.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc02g081990.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g083870.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc06g009180.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc06g034360.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc07g064170.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc07g064180.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e017514_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e036264_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 39 329
No external refs found!