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  5. AMTR_s00106p00049030

AMTR_s00106p00049030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.26

Description : Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0009405 (Archaeplastida) Phylogenetic Tree(s): OG0009405_tree ,
OG_05_0009405 (LandPlants) Phylogenetic Tree(s): OG_05_0009405_tree ,
OG_06_0006571 (SeedPlants) Phylogenetic Tree(s): OG_06_0006571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00049030
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030107001 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019107 myristoyltransferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 238 270
IPR002885 Pentatricopeptide_repeat 343 375
IPR002885 Pentatricopeptide_repeat 659 685
IPR002885 Pentatricopeptide_repeat 447 479
IPR002885 Pentatricopeptide_repeat 700 744
IPR002885 Pentatricopeptide_repeat 592 640
IPR002885 Pentatricopeptide_repeat 174 219
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 490 535
IPR002885 Pentatricopeptide_repeat 101 150
IPR002885 Pentatricopeptide_repeat 276 325
IPR002885 Pentatricopeptide_repeat 559 588
IPR002885 Pentatricopeptide_repeat 35 58
No external refs found!