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  5. AMTR_s00106p00065610

AMTR_s00106p00065610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.41

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000498 (LandPlants) Phylogenetic Tree(s): OG_05_0000498_tree ,
OG_06_0000376 (SeedPlants) Phylogenetic Tree(s): OG_06_0000376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00065610
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT5G56840 No alias myb-like transcription factor family protein 0.05 Archaeplastida
GSVIVT01031975001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01031982001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_28926 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os01g44390.2 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os06g07640.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_10432538g0010 No alias transcription factor (MYB-related) 0.02 Archaeplastida
MA_11322g0010 No alias transcription factor (MYB-related) 0.02 Archaeplastida
MA_16729g0010 No alias transcription factor (MYB-related) 0.05 Archaeplastida
MA_254136g0010 No alias transcription factor (MYB-related) 0.05 Archaeplastida
MA_41041g0010 No alias transcription factor (MYB-related) 0.04 Archaeplastida
MA_413315g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_957399g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Pp3c9_19080V3.1 No alias myb-like transcription factor family protein 0.02 Archaeplastida
Solyc03g096350.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Solyc06g076770.3.1 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Solyc08g078340.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e025946_P002 No alias transcription factor (MYB-related) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004560 alpha-L-fucosidase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
MF GO:0015928 fucosidase activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 4 47
IPR001005 SANT/Myb 121 165
No external refs found!