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  5. AMTR_s00106p00092510

AMTR_s00106p00092510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.62

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0007936 (SeedPlants) Phylogenetic Tree(s): OG_06_0007936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00092510
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT1G05310 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G17060 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G18990 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G47500 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.01 Archaeplastida
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01013839001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_01459 No alias pectin methylesterase 0.03 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.03 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.03 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.03 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.03 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os04g46740.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g45720.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os11g45730.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os12g37660.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_6780346g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_99816g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_22810V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_15080V3.1 No alias pectin methylesterase 31 0.02 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c4_10640V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c8_1440V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c8_460V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Solyc01g109740.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.01 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc12g099230.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e002891_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e007306_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 45 337
No external refs found!