1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00106p00127480

AMTR_s00106p00127480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.97

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0011521 (SeedPlants) Phylogenetic Tree(s): OG_06_0011521_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00127480
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g51140.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
MA_29186g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g17350.1 No alias transcription factor (bHLH) 0.01 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.01 Archaeplastida
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016851 magnesium chelatase activity IEP Neighborhood
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Neighborhood
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 308 354
No external refs found!