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  5. AMTR_s00106p00142470

AMTR_s00106p00142470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00106.114

Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00106p00142470
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00235390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
AMTR_s00022p00198330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.05 Archaeplastida
AT1G20980 SPL1R2, ATSPL14,... squamosa promoter binding protein-like 14 0.02 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.02 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.04 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.04 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 Archaeplastida
Cre02.g112750 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
Cre07.g325738 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.09 Archaeplastida
GSVIVT01010496001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01012247001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01014302001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
GSVIVT01032239001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01033064001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01033519001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.06 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.05 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os06g44860.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.09 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_10049111g0010 No alias transcription factor (SBP) 0.01 Archaeplastida
MA_10434066g0020 No alias Squamosa promoter-binding-like protein 15 OS=Oryza... 0.02 Archaeplastida
MA_10435426g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_7789506g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_92489g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
Mp1g10020.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Pp3c12_24350V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.05 Archaeplastida
Pp3c16_7540V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c25_8610V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c25_8630V3.1 No alias squamosa promoter binding protein-like 2 0.03 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.05 Archaeplastida
Pp3c5_22750V3.1 No alias squamosa promoter binding protein-like 8 0.03 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.05 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.09 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e013198_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e021962_P003 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e021967_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.07 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e030416_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e037693_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.07 Archaeplastida
Zm00001e041822_P001 No alias transcription factor (SBP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000910 cytokinesis IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004794 L-threonine ammonia-lyase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006549 isoleucine metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009097 isoleucine biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016841 ammonia-lyase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 157 234
No external refs found!