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  5. AMTR_s00109p00015260

AMTR_s00109p00015260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.2

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00015260
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00089p00081270 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.07 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.02 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.07 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.07 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.03 Archaeplastida
AT5G13790 AGL15 AGAMOUS-like 15 0.02 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G51870 AGL71 AGAMOUS-like 71 0.02 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01010218001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01015649001 No alias No description available 0.02 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01027579001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01037031001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_05359 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_12778 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os09g02780.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os10g39130.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_276701g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_63212g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.08 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_899014g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Pp3c3_31770V3.1 No alias AGAMOUS-like 104 0.02 Archaeplastida
Pp3c8_6890V3.1 No alias AGAMOUS-like 104 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Smo113962 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Smo69980 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.03 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.04 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e019057_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030187_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 59
No external refs found!