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  5. AMTR_s00109p00088200

AMTR_s00109p00088200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.71

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS13 component


Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree ,
OG_06_0002387 (SeedPlants) Phylogenetic Tree(s): OG_06_0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00088200
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT3G60770 No alias Ribosomal protein S13/S15 0.06 Archaeplastida
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.06 Archaeplastida
Cpa|evm.model.tig00000489.15 No alias 40S ribosomal protein S13 OS=Glycine max 0.01 Archaeplastida
Cre07.g331900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
GSVIVT01018537001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01027637001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
Gb_18181 No alias component RPS13 of SSU proteome 0.04 Archaeplastida
Gb_34582 No alias component RPS13 of SSU proteome 0.04 Archaeplastida
LOC_Os07g38540.1 No alias component RPS13 of SSU proteome 0.06 Archaeplastida
LOC_Os08g02400.1 No alias component RPS13 of SSU proteome 0.08 Archaeplastida
LOC_Os08g02410.1 No alias component RPS13 of SSU proteome 0.04 Archaeplastida
MA_141232g0010 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.06 Archaeplastida
Pp3c11_1100V3.1 No alias ribosomal protein S13A 0.05 Archaeplastida
Pp3c16_15220V3.1 No alias ribosomal protein S13A 0.12 Archaeplastida
Pp3c7_26720V3.1 No alias ribosomal protein S13A 0.07 Archaeplastida
Smo440805 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Solyc01g091220.3.1 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
Solyc03g083530.3.1 No alias component RPS13 of SSU proteome 0.08 Archaeplastida
Solyc05g051000.3.1 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
Solyc10g018250.2.1 No alias component RPS13 of SSU proteome 0.06 Archaeplastida
Solyc11g072260.2.1 No alias component RPS13 of SSU proteome 0.07 Archaeplastida
Zm00001e021837_P003 No alias component RPS13 of SSU proteome 0.06 Archaeplastida
Zm00001e021839_P001 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
Zm00001e029210_P002 No alias component RPS13 of SSU proteome 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0017003 protein-heme linkage IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0017006 protein-tetrapyrrole linkage IEP Neighborhood
MF GO:0018580 nitronate monooxygenase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 67 150
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!