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  5. AMTR_s00109p00094550

AMTR_s00109p00094550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.81

Description : High mobility group B protein 1 OS=Arabidopsis thaliana


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0006412 (SeedPlants) Phylogenetic Tree(s): OG_06_0006412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00094550
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034361001 No alias High mobility group B protein 7 OS=Arabidopsis thaliana 0.01 Archaeplastida
Zm00001e034918_P002 No alias HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 112.0) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 40 109
No external refs found!