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  5. AMTR_s00110p00138300

AMTR_s00110p00138300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.112

Description : Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana


Gene families : OG0001060 (Archaeplastida) Phylogenetic Tree(s): OG0001060_tree ,
OG_05_0001470 (LandPlants) Phylogenetic Tree(s): OG_05_0001470_tree ,
OG_06_0007371 (SeedPlants) Phylogenetic Tree(s): OG_06_0007371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00138300
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 411
IPR002885 Pentatricopeptide_repeat 345 375
IPR002885 Pentatricopeptide_repeat 453 496
IPR002885 Pentatricopeptide_repeat 153 199
IPR002885 Pentatricopeptide_repeat 228 255
No external refs found!