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  5. AMTR_s00110p00146400

AMTR_s00110p00146400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.121

Description : DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree ,
OG_06_0001729 (SeedPlants) Phylogenetic Tree(s): OG_06_0001729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00110p00146400
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00041680 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH12... 0.01 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Cpa|evm.model.tig00000865.27 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
Cpa|evm.model.tig00000865.28 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
Cre17.g744147 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.16 Archaeplastida
GSVIVT01010769001 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.03 Archaeplastida
LOC_Os02g01740.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.09 Archaeplastida
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.08 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.11 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.09 Archaeplastida
Mp7g00250.1 No alias RNA helicase (Brr2) 0.08 Archaeplastida
Pp3c1_35880V3.1 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.05 Archaeplastida
Pp3c2_9850V3.1 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Smo144158 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Solyc06g069480.3.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.08 Archaeplastida
Zm00001e035676_P001 No alias RNA helicase (Brr2) 0.03 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004179 Sec63-dom 925 1232
IPR004179 Sec63-dom 1756 1895
IPR001650 Helicase_C 1561 1638
IPR001650 Helicase_C 726 803
IPR011545 DEAD/DEAH_box_helicase_dom 1274 1436
IPR011545 DEAD/DEAH_box_helicase_dom 428 601
No external refs found!