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  5. AMTR_s00111p00018680

AMTR_s00111p00018680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00111.4

Description : Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.MSH4 component


Gene families : OG0005018 (Archaeplastida) Phylogenetic Tree(s): OG0005018_tree ,
OG_05_0007193 (LandPlants) Phylogenetic Tree(s): OG_05_0007193_tree ,
OG_06_0005760 (SeedPlants) Phylogenetic Tree(s): OG_06_0005760_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00111p00018680
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AT4G17380 ATMSH4, MSH4 MUTS-like protein 4 0.02 Archaeplastida
GSVIVT01004726001 No alias DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Mp1g18290.1 No alias component MSH4 of MSH4-MSH5 Holliday junction... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 561 791
IPR007696 DNA_mismatch_repair_MutS_core 226 546
IPR007861 DNA_mismatch_repair_MutS_clamp 417 506
No external refs found!