AMTR_s00111p00077850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00111.49

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000355 (Archaeplastida) Phylogenetic Tree(s): OG0000355_tree ,
OG_05_0000278 (LandPlants) Phylogenetic Tree(s): OG_05_0000278_tree ,
OG_06_0000297 (SeedPlants) Phylogenetic Tree(s): OG_06_0000297_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00111p00077850

Target Alias Description ECC score Gene Family Method Actions
Gb_12394 No alias Homeobox-leucine zipper protein HOX11 OS=Oryza sativa... 0.02 Archaeplastida
MA_126021g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_194299g0010 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
MA_860238g0010 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 112 166
IPR006712 HD-ZIP_N 30 87
IPR003106 Leu_zip_homeo 168 208
No external refs found!