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  5. AT1G60360

AT1G60360


Description : RING/U-box superfamily protein


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G60360
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00061490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AT1G18780 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G21960 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G51325 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01020763001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.19 Archaeplastida
GSVIVT01022971001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
GSVIVT01022973001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.25 Archaeplastida
Gb_30381 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.02 Archaeplastida
LOC_Os06g08250.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_413614g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_63700g0010 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc01g104260.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.23 Archaeplastida
Solyc07g007170.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g055330.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc08g067290.3.1 No alias AIP2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Solyc11g012950.2.1 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e023806_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.03 Archaeplastida
Zm00001e030803_P001 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.12 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0001666 response to hypoxia IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004630 phospholipase D activity IEP Neighborhood
MF GO:0004816 asparagine-tRNA ligase activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009408 response to heat IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP Neighborhood
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016688 L-ascorbate peroxidase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0080165 callose deposition in phloem sieve plate IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 223 265
No external refs found!