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  5. AT1G60410

AT1G60410


Description : F-box family protein


Gene families : OG0001957 (Archaeplastida) Phylogenetic Tree(s): OG0001957_tree ,
OG_05_0001277 (LandPlants) Phylogenetic Tree(s): OG_05_0001277_tree ,
OG_06_0000660 (SeedPlants) Phylogenetic Tree(s): OG_06_0000660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G60410
Cluster HCCA: Cluster_318

Target Alias Description ECC score Gene Family Method Actions
AT1G32020 No alias F-box family protein 0.05 Archaeplastida
AT1G60400 No alias F-box/RNI-like superfamily protein 0.04 Archaeplastida
AT3G23955 No alias F-box family protein 0.05 Archaeplastida
AT5G22660 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.04 Archaeplastida
AT5G44940 No alias F-box/RNI-like superfamily protein 0.03 Archaeplastida
AT5G44970 No alias Protein with RNI-like/FBD-like domains 0.03 Archaeplastida
AT5G53640 No alias CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Neighborhood
BP GO:0000719 photoreactive repair IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003913 DNA photolyase activity IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006290 pyrimidine dimer repair IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008143 poly(A) binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009650 UV protection IEP Neighborhood
CC GO:0009898 cytoplasmic side of plasma membrane IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
MF GO:0010175 sphingosine transmembrane transporter activity IEP Neighborhood
BP GO:0010466 negative regulation of peptidase activity IEP Neighborhood
BP GO:0010951 negative regulation of endopeptidase activity IEP Neighborhood
MF GO:0015101 organic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015166 polyol transmembrane transporter activity IEP Neighborhood
MF GO:0015204 urea transmembrane transporter activity IEP Neighborhood
MF GO:0015665 alcohol transmembrane transporter activity IEP Neighborhood
BP GO:0015840 urea transport IEP Neighborhood
BP GO:0019755 one-carbon compound transport IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0030162 regulation of proteolysis IEP Neighborhood
MF GO:0032442 phenylcoumaran benzylic ether reductase activity IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045861 negative regulation of proteolysis IEP Neighborhood
MF GO:0046624 sphingolipid transporter activity IEP Neighborhood
BP GO:0048235 pollen sperm cell differentiation IEP Neighborhood
CC GO:0048555 generative cell nucleus IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051346 negative regulation of hydrolase activity IEP Neighborhood
BP GO:0051865 protein autoubiquitination IEP Neighborhood
BP GO:0052547 regulation of peptidase activity IEP Neighborhood
BP GO:0052548 regulation of endopeptidase activity IEP Neighborhood
MF GO:0070717 poly-purine tract binding IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
CC GO:0098552 side of membrane IEP Neighborhood
CC GO:0098562 cytoplasmic side of membrane IEP Neighborhood
MF GO:0098599 palmitoyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006566 FBD 361 401
No external refs found!