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  5. AMTR_s00116p00025230

AMTR_s00116p00025230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00116.2

Description : Probable pectinesterase 8 OS=Arabidopsis thaliana


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0039511 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00116p00025230
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AT1G69940 ATPPME1, PPME1 Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G19730 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G47500 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01023786001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01034985001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Gb_17798 No alias pectin methylesterase 0.05 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os04g46740.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.04 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_10428610g0020 No alias pectin methylesterase 0.06 Archaeplastida
MA_14449g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_33008g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c8_1680V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo164202 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc04g080530.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc08g078640.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e032213_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 70 181
No external refs found!