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  5. AMTR_s00117p00036240

AMTR_s00117p00036240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00117.8

Description : Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).TUG1 gamma tubulin component


Gene families : OG0003053 (Archaeplastida) Phylogenetic Tree(s): OG0003053_tree ,
OG_05_0003242 (LandPlants) Phylogenetic Tree(s): OG_05_0003242_tree ,
OG_06_0002917 (SeedPlants) Phylogenetic Tree(s): OG_06_0002917_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00117p00036240
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
MA_10436340g0010 No alias gamma tubulin component TUG1 of gamma-Tubulin ring... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006184 obsolete GTP catabolic process IEA Interproscan
BP GO:0051258 protein polymerization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 264 394
IPR003008 Tubulin_FtsZ_GTPase 4 226
No external refs found!