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  5. AMTR_s00117p00063030

AMTR_s00117p00063030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00117.17

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0011999 (SeedPlants) Phylogenetic Tree(s): OG_06_0011999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00117p00063030
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AT1G77410 BGAL16 beta-galactosidase 16 0.03 Archaeplastida
Smo269483 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001944 Glycoside_Hdrlase_35 38 342
No external refs found!