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  5. AMTR_s00119p00089020

AMTR_s00119p00089020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00119.67

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0007405 (LandPlants) Phylogenetic Tree(s): OG_05_0007405_tree ,
OG_06_0003946 (SeedPlants) Phylogenetic Tree(s): OG_06_0003946_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00119p00089020
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Gb_12946 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 Archaeplastida
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g74040.1 No alias Probable E3 ubiquitin-protein ligase RHC2A... 0.02 Archaeplastida
LOC_Os02g55480.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os03g59760.1 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.07 Archaeplastida
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.01 Archaeplastida
Pp3c11_26010V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Solyc06g005650.2.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 217 259
No external refs found!