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Aliases : evm_27.TU.AmTr_v1.0_scaffold00120.52
Description : Cell wall.pectin.modification and degradation.pectate lyase
Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00120p00111300 | |
| Cluster | HCCA: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | Archaeplastida | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| AT1G11920 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT3G01270 | No alias | Pectate lyase family protein | 0.03 | Archaeplastida | |
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.05 | Archaeplastida | |
| AT3G24670 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| AT3G27400 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| AT3G53190 | No alias | Pectin lyase-like superfamily protein | 0.06 | Archaeplastida | |
| AT4G13710 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT4G22080 | RHS14 | root hair specific 14 | 0.03 | Archaeplastida | |
| AT4G24780 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G04310 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| GSVIVT01016208001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01016209001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| GSVIVT01029048001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| GSVIVT01033671001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | Archaeplastida | |
| Gb_02248 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Gb_04026 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Gb_19802 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Gb_37157 | No alias | Probable pectate lyase 9 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
| LOC_Os02g12300.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| LOC_Os04g05050.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| LOC_Os10g31910.1 | No alias | pectate lyase | 0.08 | Archaeplastida | |
| MA_101171g0010 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_10332686g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_10429028g0020 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_10430145g0020 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| MA_10430145g0030 | No alias | pectate lyase | 0.07 | Archaeplastida | |
| MA_10437227g0030 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_204440g0010 | No alias | Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... | 0.04 | Archaeplastida | |
| MA_476625g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_66914g0010 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Mp8g00770.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Pp3c10_20140V3.1 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| Pp3c14_6710V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c15_19060V3.1 | No alias | Pectin lyase-like superfamily protein | 0.01 | Archaeplastida | |
| Pp3c17_16370V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c1_33130V3.1 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| Pp3c1_4040V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c2_9460V3.1 | No alias | Pectate lyase family protein | 0.04 | Archaeplastida | |
| Pp3c3_20320V3.1 | No alias | Pectin lyase-like superfamily protein | 0.05 | Archaeplastida | |
| Solyc01g010740.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g031960.3.1 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Solyc02g067450.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g087670.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc02g093580.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc03g058890.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc03g071570.3.1 | No alias | pectate lyase | 0.1 | Archaeplastida | |
| Solyc03g111690.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc03g113150.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc05g007080.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc05g014000.4.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Solyc06g071840.3.1 | No alias | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.02 | Archaeplastida | |
| Solyc06g083580.4.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc09g008380.3.1 | No alias | pectate lyase | 0.08 | Archaeplastida | |
| Zm00001e004654_P002 | No alias | pectate lyase | 0.09 | Archaeplastida | |
| Zm00001e024959_P001 | No alias | pectate lyase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
| MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0004650 | polygalacturonase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
| BP | GO:0006184 | obsolete GTP catabolic process | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0007155 | cell adhesion | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| MF | GO:0016597 | amino acid binding | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| BP | GO:0022610 | biological adhesion | IEP | Neighborhood |
| MF | GO:0030246 | carbohydrate binding | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| MF | GO:0051087 | chaperone binding | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Neighborhood |
| MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 147 | 333 |
| No external refs found! |