AMTR_s00121p00103870 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00121.21

Description : DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana

Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0007084 (LandPlants) Phylogenetic Tree(s): OG_05_0007084_tree ,
OG_06_0007464 (SeedPlants) Phylogenetic Tree(s): OG_06_0007464_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00121p00103870
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
AT1G16280	AtRH36, SWA3, RH36	RNA helicase 36	0.04	Archaeplastida
Cre10.g420900	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.06	Archaeplastida
GSVIVT01009935001	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.07	Archaeplastida
GSVIVT01036761001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Gb_16576	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.04	Archaeplastida
Gb_23737	No alias	SSU processome assembly factor (SWA3)	0.03	Archaeplastida
MA_6520706g0010	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.03	Archaeplastida
MA_8567568g0010	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.03	Archaeplastida
Mp1g19410.1	No alias	SSU processome assembly factor (SWA3)	0.03	Archaeplastida
Mp4g20180.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.03	Archaeplastida
Pp3c1_37280V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Archaeplastida
Pp3c9_14310V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.08	Archaeplastida
Smo6590	No alias	DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa...	0.02	Archaeplastida
Solyc04g081580.4.1	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis...	0.03	Archaeplastida
Solyc10g007550.3.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e010143_P002	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.03	Archaeplastida
Zm00001e013281_P004	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.02	Archaeplastida
Zm00001e034676_P001	No alias	DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa...	0.03	Archaeplastida
Zm00001e035639_P002	No alias	SSU processome assembly factor (SWA3)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008026	ATP-dependent helicase activity	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004832	valine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005669	transcription factor TFIID complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	161	331
IPR001650	Helicase_C	405	477

External Links

No external refs found!

AMTR_s00121p00103870 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation