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  5. AMTR_s00122p00108900

AMTR_s00122p00108900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00122.48

Description : RNA biosynthesis.transcriptional activation.DBP transcription factor


Gene families : OG0000802 (Archaeplastida) Phylogenetic Tree(s): OG0000802_tree ,
OG_05_0000905 (LandPlants) Phylogenetic Tree(s): OG_05_0000905_tree ,
OG_06_0002937 (SeedPlants) Phylogenetic Tree(s): OG_06_0002937_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00122p00108900
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AT3G62260 No alias Protein phosphatase 2C family protein 0.03 Archaeplastida
LOC_Os01g19130.1 No alias transcription factor (DBP) 0.03 Archaeplastida
MA_13571g0010 No alias transcription factor (DBP). clade G phosphatase 0.02 Archaeplastida
Solyc01g068000.4.1 No alias transcription factor (DBP) 0.03 Archaeplastida
Solyc06g009390.3.1 No alias transcription factor (DBP) 0.03 Archaeplastida
Zm00001e025432_P001 No alias transcription factor (DBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019107 myristoyltransferase activity IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0051766 inositol trisphosphate kinase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 89 356
No external refs found!