AT1G60960 (IRT3, ATIRT3)

Aliases : IRT3, ATIRT3

Description : iron regulated transporter 3

Gene families : OG0000307 (Archaeplastida) Phylogenetic Tree(s): OG0000307_tree ,
OG_05_0000241 (LandPlants) Phylogenetic Tree(s): OG_05_0000241_tree ,
OG_06_0004727 (SeedPlants) Phylogenetic Tree(s): OG_06_0004727_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G60960
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00045670	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.ZIP...	0.04	Archaeplastida
AMTR_s00032p00182850	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.ZIP...	0.01	Archaeplastida
AMTR_s00062p00183460	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.ZIP...	0.05	Archaeplastida
AMTR_s00062p00183790	evm_27.TU.AmTr_v1...	Solute transport.carrier-mediated transport.ZIP...	0.02	Archaeplastida
AT4G33020	ATZIP9, ZIP9	ZIP metal ion transporter family	0.01	Archaeplastida
GSVIVT01014337001	No alias	Solute transport.carrier-mediated transport.ZIP...	0.02	Archaeplastida
GSVIVT01026255001	No alias	Solute transport.carrier-mediated transport.ZIP...	0.01	Archaeplastida
GSVIVT01032785001	No alias	Solute transport.carrier-mediated transport.ZIP...	0.08	Archaeplastida
Gb_00356	No alias	metal cation transporter (ZIP)	0.03	Archaeplastida
Gb_39062	No alias	metal cation transporter (ZIP)	0.03	Archaeplastida
LOC_Os03g46470.1	No alias	metal cation transporter (ZIP)	0.02	Archaeplastida
LOC_Os04g52310.1	No alias	metal cation transporter (ZIP)	0.02	Archaeplastida
LOC_Os07g12890.1	No alias	metal cation transporter (ZIP)	0.04	Archaeplastida
MA_6126514g0010	No alias	metal cation transporter (ZIP)	0.02	Archaeplastida
MA_842474g0010	No alias	metal cation transporter (ZIP)	0.02	Archaeplastida
Pp3c18_9640V3.1	No alias	zinc transporter 8 precursor	0.02	Archaeplastida
Solyc02g069190.4.1	No alias	metal cation transporter (ZIP)	0.04	Archaeplastida
Solyc02g069200.3.1	No alias	metal cation transporter (ZIP)	0.04	Archaeplastida
Solyc02g081600.4.1	No alias	metal cation transporter (ZIP)	0.02	Archaeplastida
Solyc07g043230.3.1	No alias	metal cation transporter (ZIP)	0.03	Archaeplastida
Zm00001e006961_P001	No alias	metal cation transporter (ZIP)	0.01	Archaeplastida
Zm00001e033157_P001	No alias	metal cation transporter (ZIP)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005381	iron ion transmembrane transporter activity	IMP	Interproscan
MF	GO:0005385	zinc ion transmembrane transporter activity	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	ISS	Interproscan
BP	GO:0006826	iron ion transport	IMP	Interproscan
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006829	zinc ion transport	IMP	Interproscan
BP	GO:0006833	water transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	ISS	Interproscan
BP	GO:0009267	cellular response to starvation	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	ISS	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0042044	fluid transport	None	Extended
BP	GO:0042594	response to starvation	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	ISS	Interproscan
MF	GO:0046915	transition metal ion transmembrane transporter activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0070838	divalent metal ion transport	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
MF	GO:0072509	divalent inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0072511	divalent inorganic cation transport	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000248	C-5 sterol desaturase activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0004108	citrate (Si)-synthase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006110	regulation of glycolytic process	IEP	Neighborhood
BP	GO:0006140	regulation of nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006596	polyamine biosynthetic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008506	sucrose:proton symporter activity	IEP	Neighborhood
MF	GO:0008553	proton-exporting ATPase activity, phosphorylative mechanism	IEP	Neighborhood
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Neighborhood
BP	GO:0009299	mRNA transcription	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0009374	biotin binding	IEP	Neighborhood
MF	GO:0009669	sucrose:cation symporter activity	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0010241	ent-kaurene oxidation to kaurenoic acid	IEP	Neighborhood
BP	GO:0010262	somatic embryogenesis	IEP	Neighborhood
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	Neighborhood
BP	GO:0010344	seed oilbody biogenesis	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Neighborhood
BP	GO:0010601	positive regulation of auxin biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015086	cadmium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015225	biotin transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015434	cadmium-transporting ATPase activity	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
CC	GO:0016602	CCAAT-binding factor complex	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Neighborhood
BP	GO:0019432	triglyceride biosynthetic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0030808	regulation of nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0030811	regulation of nucleotide catabolic process	IEP	Neighborhood
CC	GO:0031012	extracellular matrix	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031350	intrinsic component of plastid membrane	IEP	Neighborhood
CC	GO:0031351	integral component of plastid membrane	IEP	Neighborhood
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0033331	ent-kaurene metabolic process	IEP	Neighborhood
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0036440	citrate synthase activity	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	Neighborhood
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	Neighborhood
MF	GO:0045547	dehydrodolichyl diphosphate synthase activity	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046886	positive regulation of hormone biosynthetic process	IEP	Neighborhood
MF	GO:0047215	indole-3-acetate beta-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0047632	agmatine deiminase activity	IEP	Neighborhood
MF	GO:0048040	UDP-glucuronate decarboxylase activity	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0051184	cofactor transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051185	coenzyme transmembrane transporter activity	IEP	Neighborhood
BP	GO:0051196	regulation of coenzyme metabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
MF	GO:0052691	UDP-arabinopyranose mutase activity	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0070704	sterol desaturase activity	IEP	Neighborhood
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Neighborhood
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080116	glucuronoxylan glucuronosyltransferase activity	IEP	Neighborhood
BP	GO:0090354	regulation of auxin metabolic process	IEP	Neighborhood
BP	GO:0090355	positive regulation of auxin metabolic process	IEP	Neighborhood
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Neighborhood
BP	GO:1900371	regulation of purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:1900542	regulation of purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:1901957	regulation of cutin biosynthetic process	IEP	Neighborhood
BP	GO:1901959	positive regulation of cutin biosynthetic process	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903578	regulation of ATP metabolic process	IEP	Neighborhood
BP	GO:2001169	regulation of ATP biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003689	ZIP	61	422

External Links

No external refs found!

AT1G60960 (IRT3, ATIRT3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation