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Aliases : evm_27.TU.AmTr_v1.0_scaffold00126.8
Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor
Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00126p00036560 | |
| Cluster | HCCA: Cluster_231 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_00751 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| Gb_15878 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Gb_31439 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| LOC_Os05g33460.2 | No alias | transcription factor (mTERF) | 0.04 | Archaeplastida | |
| LOC_Os05g34160.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| LOC_Os06g12070.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| LOC_Os06g12080.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| LOC_Os11g14130.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| MA_10427666g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_192398g0010 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| MA_31885g0010 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| MA_415377g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| Pp3c4_13990V3.1 | No alias | Mitochondrial transcription termination factor family protein | 0.02 | Archaeplastida | |
| Solyc02g082010.3.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Solyc04g072550.3.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Zm00001e031638_P001 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0004525 | ribonuclease III activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006891 | intra-Golgi vesicle-mediated transport | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016073 | snRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0030173 | integral component of Golgi membrane | IEP | Neighborhood |
| MF | GO:0030515 | snoRNA binding | IEP | Neighborhood |
| BP | GO:0031120 | snRNA pseudouridine synthesis | IEP | Neighborhood |
| CC | GO:0031228 | intrinsic component of Golgi membrane | IEP | Neighborhood |
| CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031301 | integral component of organelle membrane | IEP | Neighborhood |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Neighborhood |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| BP | GO:0040031 | snRNA modification | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003690 | MTERF | 98 | 276 |
| No external refs found! |