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  5. AMTR_s00126p00116180

AMTR_s00126p00116180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00126.55

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.Rad54 chromatin remodeling factor


Gene families : OG0002451 (Archaeplastida) Phylogenetic Tree(s): OG0002451_tree ,
OG_05_0003563 (LandPlants) Phylogenetic Tree(s): OG_05_0003563_tree ,
OG_06_0005973 (SeedPlants) Phylogenetic Tree(s): OG_06_0005973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00126p00116180
Cluster HCCA: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
Cre03.g189000 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Cre10.g430950 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
Gb_13098 No alias Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_13099 No alias DNA repair and recombination protein RAD54 OS=Oryza... 0.03 Archaeplastida
Mp6g06120.1 No alias chromatin remodeling factor (Rad54) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 625 704
IPR000330 SNF2_N 238 544
No external refs found!