Aliases : evm_27.TU.AmTr_v1.0_scaffold00129.11
Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase
Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00129p00031200 | |
Cluster | HCCA: Cluster_96 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00239700 | evm_27.TU.AmTr_v1... | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | Archaeplastida | |
AMTR_s00021p00242180 | evm_27.TU.AmTr_v1... | Cell wall.pectin.homogalacturonan.modification and... | 0.08 | Archaeplastida | |
AT3G49220 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.05 | Archaeplastida | |
AT4G33220 | PME44, ATPME44 | pectin methylesterase 44 | 0.07 | Archaeplastida | |
GSVIVT01014999001 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.06 | Archaeplastida | |
GSVIVT01023135001 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | Archaeplastida | |
GSVIVT01026518001 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | Archaeplastida | |
Gb_01422 | No alias | pectin methylesterase | 0.04 | Archaeplastida | |
Gb_25439 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
Gb_35881 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
Gb_36005 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
LOC_Os01g21034.1 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
LOC_Os01g65790.1 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
LOC_Os02g54190.1 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
LOC_Os06g09340.1 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
Pp3c17_6440V3.1 | No alias | pectin methylesterase PCR fragment F | 0.02 | Archaeplastida | |
Pp3c26_2170V3.1 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.02 | Archaeplastida | |
Pp3c2_35260V3.1 | No alias | pectin methylesterase 3 | 0.02 | Archaeplastida | |
Pp3c8_3840V3.1 | No alias | Plant invertase/pectin methylesterase inhibitor superfamily | 0.02 | Archaeplastida | |
Smo114014 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | Archaeplastida | |
Smo420760 | No alias | Cell wall.pectin.homogalacturonan.modification and... | 0.03 | Archaeplastida | |
Solyc01g091050.4.1 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
Solyc01g099960.4.1 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
Solyc02g080220.3.1 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
Solyc09g075350.4.1 | No alias | pectin methylesterase | 0.02 | Archaeplastida | |
Zm00001e009863_P001 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
Zm00001e014142_P001 | No alias | pectin methylesterase | 0.03 | Archaeplastida | |
Zm00001e017515_P001 | No alias | pectin methylesterase | 0.04 | Archaeplastida | |
Zm00001e034231_P001 | No alias | pectin methylesterase | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004857 | enzyme inhibitor activity | IEA | Interproscan |
CC | GO:0005618 | cell wall | IEA | Interproscan |
MF | GO:0030599 | pectinesterase activity | IEA | Interproscan |
BP | GO:0042545 | cell wall modification | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
MF | GO:0004519 | endonuclease activity | IEP | Neighborhood |
MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
MF | GO:0005048 | signal sequence binding | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Neighborhood |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006621 | protein retention in ER lumen | IEP | Neighborhood |
BP | GO:0007275 | multicellular organism development | IEP | Neighborhood |
BP | GO:0008152 | metabolic process | IEP | Neighborhood |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0032501 | multicellular organismal process | IEP | Neighborhood |
BP | GO:0032502 | developmental process | IEP | Neighborhood |
BP | GO:0032507 | maintenance of protein location in cell | IEP | Neighborhood |
MF | GO:0033218 | amide binding | IEP | Neighborhood |
MF | GO:0033897 | ribonuclease T2 activity | IEP | Neighborhood |
BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | Neighborhood |
MF | GO:0042277 | peptide binding | IEP | Neighborhood |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Neighborhood |
BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
BP | GO:0045185 | maintenance of protein location | IEP | Neighborhood |
MF | GO:0046923 | ER retention sequence binding | IEP | Neighborhood |
BP | GO:0048856 | anatomical structure development | IEP | Neighborhood |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051235 | maintenance of location | IEP | Neighborhood |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0051651 | maintenance of location in cell | IEP | Neighborhood |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0065007 | biological regulation | IEP | Neighborhood |
BP | GO:0072595 | maintenance of protein localization in organelle | IEP | Neighborhood |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
No external refs found! |