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  5. AMTR_s00129p00044320

AMTR_s00129p00044320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00129.20

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00129p00044320
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.02 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT4G02300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G09760 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.11 Archaeplastida
AT5G49180 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028041001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01031164001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.08 Archaeplastida
Gb_10522 No alias pectin methylesterase 0.06 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.03 Archaeplastida
Gb_25439 No alias pectin methylesterase 0.04 Archaeplastida
Gb_35881 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g15039.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os08g34910.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os09g26360.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os11g36240.1 No alias pectin methylesterase 0.02 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10372207g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_130858g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_158002g0020 No alias pectin methylesterase 0.03 Archaeplastida
MA_161148g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_2017g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c15_12280V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.03 Archaeplastida
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c18_22120V3.1 No alias pectin methylesterase PCR fragment F 0.02 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c21_22110V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c2_35260V3.1 No alias pectin methylesterase 3 0.02 Archaeplastida
Pp3c3_36450V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Solyc01g066360.3.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc01g066390.4.1 No alias Probable pectinesterase/pectinesterase inhibitor 58... 0.02 Archaeplastida
Solyc01g066420.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc01g099940.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc01g099960.4.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g078090.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc03g078100.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc03g123620.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc07g017560.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc09g075350.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc12g099410.2.1 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e004056_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e014142_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e022184_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e025576_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e041006_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
CC GO:0005618 cell wall IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 42 198
IPR000070 Pectinesterase_cat 253 549
No external refs found!