AMTR_s00129p00073090 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00129.46

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00129p00073090
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00101250	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AT5G53370	ATPMEPCRF, PMEPCRF	pectin methylesterase PCR fragment F	0.02	Archaeplastida
Gb_06354	No alias	pectin methylesterase	0.02	Archaeplastida
MA_177599g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_26888g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_54974g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c15_12280V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
Smo114014	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Smo154356	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
Zm00001e017514_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e017515_P001	No alias	pectin methylesterase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
CC	GO:0044464	cell part	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	234	524
IPR006501	Pectinesterase_inhib_dom	41	193

External Links

No external refs found!