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  5. AMTR_s00131p00098210

AMTR_s00131p00098210 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00131.69

Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0001265 (Archaeplastida) Phylogenetic Tree(s): OG0001265_tree ,
OG_05_0000728 (LandPlants) Phylogenetic Tree(s): OG_05_0000728_tree ,
OG_06_0007555 (SeedPlants) Phylogenetic Tree(s): OG_06_0007555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00131p00098210
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.08 Archaeplastida
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.06 Archaeplastida
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.04 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
MA_18233g0020 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
MA_20659g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.04 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Smo80491 No alias Pentatricopeptide repeat-containing protein At1g62670,... 0.04 Archaeplastida
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 377 408
IPR002885 Pentatricopeptide_repeat 175 204
IPR002885 Pentatricopeptide_repeat 628 658
IPR002885 Pentatricopeptide_repeat 139 168
IPR002885 Pentatricopeptide_repeat 276 324
IPR002885 Pentatricopeptide_repeat 555 604
IPR002885 Pentatricopeptide_repeat 415 464
IPR002885 Pentatricopeptide_repeat 486 532
No external refs found!