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  5. AMTR_s00135p00066200

AMTR_s00135p00066200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.30

Description : Cell cycle.regulation.cyclins.CYCD-type cyclin


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0000382 (LandPlants) Phylogenetic Tree(s): OG_05_0000382_tree ,
OG_06_0000715 (SeedPlants) Phylogenetic Tree(s): OG_06_0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00135p00066200
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.03 Archaeplastida
AT3G50070 CYCD3;3 CYCLIN D3;3 0.07 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.04 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.06 Archaeplastida
GSVIVT01000226001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01003610001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
GSVIVT01003674001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01009353001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.05 Archaeplastida
Gb_34092 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os03g10650.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.05 Archaeplastida
LOC_Os07g37010.1 No alias cyclin (CYCD) 0.05 Archaeplastida
LOC_Os07g42860.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.08 Archaeplastida
LOC_Os09g21450.1 No alias cyclin (CYCD) 0.07 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_10429174g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10429174g0030 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_10436212g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_559426g0020 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_94639g0010 No alias cyclin (CYCD) 0.02 Archaeplastida
Mp8g17230.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc02g079370.3.1 No alias cyclin (CYCD) 0.05 Archaeplastida
Solyc04g078470.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Solyc07g054950.2.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e003084_P002 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 59 185
IPR004367 Cyclin_C-dom 188 290
No external refs found!