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  5. AMTR_s00135p00094680

AMTR_s00135p00094680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.53

Description : Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0011531 (SeedPlants) Phylogenetic Tree(s): OG_06_0011531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00135p00094680
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.01 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.01 Archaeplastida
LOC_Os12g07260.1 No alias RNA editing factor (POCO) 0.01 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.02 Archaeplastida
Solyc01g089870.3.1 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 Archaeplastida
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.01 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.01 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004520 endodeoxyribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 259 284
IPR002885 Pentatricopeptide_repeat 223 249
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 152 175
No external refs found!