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  5. AMTR_s00136p00108810

AMTR_s00136p00108810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00136.60

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001808 (SeedPlants) Phylogenetic Tree(s): OG_06_0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00136p00108810
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00054750 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AT2G28470 BGAL8 beta-galactosidase 8 0.03 Archaeplastida
AT4G26140 BGAL12 beta-galactosidase 12 0.03 Archaeplastida
GSVIVT01008835001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
GSVIVT01009791001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
GSVIVT01017403001 No alias No description available 0.02 Archaeplastida
GSVIVT01018853001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01024031001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 Archaeplastida
GSVIVT01025170001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01033736001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
LOC_Os06g37560.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os10g19960.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_10436863g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_14774g0010 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
MA_168609g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_207283g0010 No alias Beta-galactosidase 8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_217488g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_329922g0010 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
MA_55965g0010 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
MA_665188g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc01g110000.3.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Solyc06g062580.3.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Solyc07g038120.1.1 No alias Beta-galactosidase OS=Malus domestica... 0.02 Archaeplastida
Zm00001e019098_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019099_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001944 Glycoside_Hdrlase_35 4 254
IPR000922 Lectin_gal-bd_dom 677 754
No external refs found!